docs: render citation metadata from references.yaml
Research-Foundations now draws every paper's metadata from
references.yaml in the AI contrib through cog blocks, with the prose
left hand-written. Correct the O-Mem entry, which cited a paper that
does not exist, date A-MEM to 2025 with its authors, and add entries
for MemGPT, LightMem, MIRIX, and the Mem0 paper. Ground the sleep cycle
and relationship tiers in their actual sources, mark source trust as
project-original, and fix memory link storage to the script and the
token advisory to the code's two tiers.
Other pages cite by name and link here instead of restating
identifiers. Persona-Protection credits MemGPT for the persona block
and re-scopes MIRIX to memory routing.
Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
The wake_up tool has been disabled in the codebase pending REM phase
implementation. Removing all documentation references to keep docs
accurate to current functionality.
Wake transitions now occur via:
- Scheduled wake time (automatic)
- Urgent events (light sleep only)
- API endpoint (manual)
Updated files:
- Architecture-Memory-and-Sleep.md: Remove from SLEEP_MODE_TOOLS
- Architecture-Tool-System.md: Remove from file listing and categories
- Data-Flow-03-Memory-Consolidation.md: Update phase diagrams
- Data-Flow-07-Sleep-Mode-Transitions.md: Remove agent-initiated section
- User-Guide-04-Troubleshooting.md: Remove wake_up from solutions
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
